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Table 4 An overview of genetic diversity studies in cotton using molecular markers

From: Cotton germplasm improvement and progress in Pakistan

Marker Country Population type Size References
  USA 16 near-homozygous elite cotton genotypes 80 RAPD primers Tatineni et al. 1996
Pakistan 31 Gossypium species, 3 subspecies and 1 interspecific hybrid18 cotton varieties11 colored cottons (10 belongs to G. hirsutum and 1 belong to G. areboreum) 5 white-linted genotypes (4 belongs to G. hirsutum and 1 belong to G. areboreum)SL 7–9 crossed with FH-634 to raise F2 and F3 segregating population 45 RAPD primers03 RAPD primers45 RAPD primers400 RAPD primers Khan et al. 2000;Mumtaz et al. 2010Khan et al. 2010Ali et al. 2009
RAPDs USA 10 varieties of Upland cotton 86 RAPD primers Lu and Myers 2002
Pakistan 30 cultivars of G. arboretum 50 RAPD primers Mehboob-ur-Rahman et al. 2008
Iran 13 F1 and F2 cotton genotypes (Gossypium hirsutum) obtained by crossing 30 RAPD primers Noormohammadi et al. 2011
India Intraspecific cotton F1 hybrid and its parents 20 RAPD primers Dongre et al. 2012
Iran 11 genotypes of G. hirsutum including 6 F2 progenies 40 RAPD primers Noormohammadi et al. 2013a
USA 24 cultivars of G. hirsutum 88 SSR primers Zhang et al. 2008
China 39 accessions of G. arboreum 358 SSR primers Liu et al. 2006
China 108 accessions of Asiatic cotton and 1 G. herbaceum 60 SSR primers Guo et al. 2007
China 43 sources of Upland cotton germplasm 36 SSR primers Chen and Du 2006
France 47 genotypes of tetraploid cotton 320 SSR primers Lacape et al. 2007
USA 96 accessions of G. arboreum 115 Genomic and EST-SSRs Kantartzi et al. 2009
SSRs Pakistan 8 accessions of G. hirsutumSL 7–9 crossed with FH-634 to raise F2 and F3 segregating population 32 SSR primers54 SSR primers Qayyum et al. 2009;Ali et al. 2009
China 59 genotypes of G. hirsutum 40 EST-SSR primers Zhang et al. 2011
Greece 29 genotypes of G. hirsutum and an interspecific hybrid 12 SSR primer pairs Kalivas et al. 2011
China 56 accessions of Sea island cotton 237 SSR primers Wang et al. 2011
Egypt 28 genotypes of Egyptian cotton 6 SSR and 5 EST-SSR primer Abdellatif et al. 2012
Pakistan 19 genotypes of Bt cotton 104 SSR primers Ullah et al. 2012
USA 193 cultivars of Upland cotton 448 SSR primers Fang et al. 2010
USA 378 accessions of G. hirsutum and 3 of G. barbadense 120 SSR primers Tyagi et al., 2014
Iran 11 genotypes of G. hirsutum including 6 F2 progenies 4 SSR primers Noormohammadi et al. 2013a
USA 11 accessions of G. hirsutum and 2 from each of G. arboreum, G. herbaceum and G. barbadense 4 EcoRI-MseI primers for AFLP Pillay and Myers, 1999
Belgium Upland cotton, wild species (G. raimondii and G. thurbrii) and their BC3 progenies 5 AFLP primers Mergeai et al. 1998
AFLPs USA 3 diploid species of Gossypium, 3 G. barbadense cultivars and 43 G. hirsutum accessions 20 AFLP primers Iqbal et al. 2001
USA 29 accessions from five species of the genus Gossypium 16 AFLP primers Abdalla et al. 2001
India 24 lines of G. hirsutum L. 6 AFLP primers Rana et al. 2005
Norway 131 accessions of G. barbadense 8 AFLP primers Westengen et al. 2005
Iran 13 F1 and F2 cotton genotypes (Gossypium hirsutum) 8 ISSR primers Noormohammadi et al. 2011
ISSRs Egypt 28 Egyptian cotton genotypes 5 ISSR primers Abdellatif et al. 2012
India Intraspecific cotton F1 hybrid and its parents 19 ISSR primers Dongre et al. 2012
Iran 11 genotypes of G. hirsutum including 6 F2 progenies 20 ISSR primers Noormohammadi et al. 2013a
SNPs Pakistan 2 cultivars of tetraploid cotton Primers correspond to FIF1 gene Ahmad et al. 2007
USA 24 lines of cotton 270 SNP loci and 92 Indel Van Deynze et al. 2009
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Journal of Cotton Research

ISSN: 2523-3254

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