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Table 2 Summary of SNPs significantly associated with fiber micronaire in five environments

From: Genome-wide association study of micronaire using a natural population of representative upland cotton (Gossypium hirsutum L.)

QTL Marker Chr. Position /bp -log10(P) R2/% Environment Reported previously
qFM-A10–1 i12339Gh A10 100 279 301 4.85 20.89 16_Ay Jamshed et al. 2016
  i12239Gh A10 100 587 583 6.84 29.39 15_Ay  
qFM-A12–1 i61168Gt A12 67 381 479 4.91 20.9 16_Ay  
i08143Gh A12 68 066 658 4.41 18.97 16_Ale  
i27811Gh A12 68 205 857 4.22∼4.78 21.35∼24.04 16_Ay 16_Sy  
i41990Gh A12 68 321 416 4.22∼4.78 21.35∼24.04 16_Ay 16_Sy  
i47170Gh A12 68 410 009 4.22∼4.78 21.35∼24.04 16_Ay 16_Sy  
i38887Gh A12 68 472 462 4.49∼5.59 19.32∼24.00 16_Ay 16_Sy BLUP  
i21853Gh A12 68 540 285 4.22∼4.78 21.35∼24.04 16_Ay 16_Sy  
i43838Gh A12 68 551 427 4.22∼4.78 21.35∼24.04 16_Ay 16_Sy  
i08151Gh A12 68 597 376 4.34∼4.73 20.34∼28.45 16_Ay 16_Sy  
i32282Gh A12 68 673 029 4.48∼5.27 19.91∼23.44 16_Ay 16_Sy BLUP  
i27971Gh A12 68 695 670 4.53 22.95 16_Sy  
i41399Gh A12 68 715 788 4.53 22.95 16_Sy  
qFM-A13–1 i20979Gh A13 2 132 189 4.23 28.53 14_Ay Wang et al. 2017a, b; Jamshed et al. 2016
i13041Gh A13 2 704 662 4.29 28.23 16_Ay  
qFM-A13–2 i35441Gh A13 74 952 854 6.64 31.45 15_Ay  
i32750Gh A13 75 105 822 4.39∼4.60 22.35∼23.00 15_Ay 16_Sy  
i46646Gh A13 75 109 913 5.14∼5.39 22.12∼22.95 15_Ay 16_Sy BLUP  
i41773Gh A13 75 116 067 5.14∼5.39 22.12∼22.95 15_Ay 16_Sy BLUP  
i33120Gh A13 75 129 388 4.32∼4.63 22.25∼23.65 15_Ay 16_Sy BLUP  
i30758Gh A13 75 130 352 4.21 18.1 16_Ale  
i35636Gh A13 75 242 672 5.14∼5.39 22.12∼22.95 15_Ay 16_Sy  
i01190Gh A13 75 398 430 4.26 18.29 16_Ale  
i42228Gh A13 75 472 091 4.35 19.55 16_Ale  
i13652Gh A13 75 504 093 4.44 19.09 16_Ale  
qFM-D03–1 i03515Gh D03 42 362 797 4.63 23.13 16_Ay Diouf et al. 2018
i21465Gh D03 43 276 036 4.91 20.9 16_Ay  
i61219Gt D03 44 406 129 4.39 22.35 15_Ay  
i63893Gm D03 44 581 155 4.46∼6.29 19.27∼26.62 15_Ay BLUP  
i43459Gh D03 45 627 279 4.31 18.31 15_Ay  
i14956Gh D03 45 689 086 4.31 18.31 15_Ay  
qFM-D06–1 i10547Gh D06 547 763 4.44∼4.81 20.47∼25.26 14_Ay 15_Ay Chen et al. 2018
i19728Gh D06 689 943 4.76 23.7 15_Ay  
qFM-D08–1 i15175Gh D08 58 849 763 4.56 30.39 14_Ay Wang et al. 2017a, b; Jia et al. 2018
i15177Gh D08 58 905 788 4.56 30.39 14_Ay  
i04608Gh D08 61 265 566 4.86 20.71 15_Ay  
i04610Gh D08 61 327 863 5.14 25.34 15_Ay  
i44633Gh D08 61 354 352 5.14 25.34 15_Ay  
i47262Gh D08 61 379 191 4.98 21.45 15_Ay  
qFM-D09–1 i38863Gh D09 29 968 447 4.91 20.9 16_Ay Jia et al. 2018
i32012Gh D09 30 108 133 4.91 20.9 16_Ay  
i45347Gh D09 30 133 934 4.91 20.9 16_Ay  
i27999Gh D09 30 418 262 4.75 23.66 16_Ay  
i19190Gh D09 30 866 022 4.43 18.84 15_Ay  
i06010Gh D09 30 870 947 4.43 18.84 15_Ay  
i06011Gh D09 30 873 661 4.43 18.84 15_Ay  
qFM-D10–1 i11504Gh D10 877 970 4.58∼5.85 21.02∼26.08 14Ay 16Sy BLUP  
i11512Gh D10 944 253 4.89 21.04 16_Sy  
i19999Gh D10 946 181 4.28 21.83 16_Sy  
i11564Gh D10 1 938 451 4.30∼4.36 18.48∼18.72 16_Sy 16Ale  
qFM-D11–1 i00901Gh D11 5 706 308 6.36 31.64 15_Ay Zhang et al. 2016; Jia et al. 2018
i50152Gb D11 5 792 360 4.51 22.88 16_Sy  
qFM-D12–1 i08142Gh D12 43 263 390 4.51 26.42 14_Ay Huang et al. 2017
i08144Gh D12 43 267 732 4.41 28.97 16_Ale  
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Journal of Cotton Research

ISSN: 2523-3254

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